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nf-core
/
tools
Python package with helper tools for the nf-core community.
https://nf-co.re
MIT License
242
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191
forks
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Update dependency textual-dev to v1.7.0
#3308
renovate[bot]
opened
1 hour ago
1
Update dependency textual to v0.88.1
#3307
renovate[bot]
opened
1 hour ago
1
Update dawidd6/action-download-artifact action to v7
#3306
renovate[bot]
closed
20 hours ago
1
Update pre-commit hook astral-sh/ruff-pre-commit to v0.8.1
#3305
renovate[bot]
closed
15 hours ago
1
Remove toList() channel operation from inside onComplete block
#3304
robsyme
opened
1 day ago
1
Conda install nf-core cli on mac arm64 fails
#3303
swingingsimian
opened
2 days ago
0
Improve documentation writing
#3302
LouisLeNezet
opened
2 days ago
1
Move modules config import
#3301
LouisLeNezet
closed
2 days ago
1
Include config `modules.config` in the wrong place ?
#3300
LouisLeNezet
closed
2 days ago
2
Update pre-commit hook astral-sh/ruff-pre-commit to v0.8.0
#3299
renovate[bot]
closed
4 days ago
1
Improve subworkflow nf-test migration warning
#3298
edmundmiller
opened
5 days ago
1
`nf-core subworkflows lint` nf-test directory is missing rule is inconsistent
#3297
edmundmiller
opened
5 days ago
1
Template: Remove `def` from `nextflow.config` and add `trace_report_suffix` param
#3296
mirpedrol
closed
4 days ago
1
Cleanup needed for nf-core logo / monochrome logs.
#3295
ewels
closed
1 day ago
2
Fix final language server errors in template
#3294
ewels
closed
1 day ago
2
Download: Seqera containers Patch 2
#3293
MatthiasZepper
opened
1 week ago
1
build: Setup VS Code tests
#3292
edmundmiller
opened
1 week ago
3
Fix usage of cache path and implement parallized testing
#3291
mashehu
opened
1 week ago
0
Add `manifest.contributors` to template
#3289
ewels
opened
1 week ago
0
Lint pipelines nextflow schema against the meta schema
#3288
mirpedrol
opened
1 week ago
0
Documentation shows the old commands without `pipelines` prefix
#3287
mirpedrol
opened
1 week ago
0
Values in comments are read when creating template for meta.yml from input options
#3286
zachary-foster
opened
1 week ago
0
download pipelines fails with some seqera containers
#3285
znorgaard
opened
1 week ago
4
Update python:3.12-slim Docker digest to 2a6386a
#3284
renovate[bot]
closed
1 week ago
1
Update codecov/codecov-action action to v5
#3283
renovate[bot]
closed
1 week ago
1
Update pre-commit hook astral-sh/ruff-pre-commit to v0.7.4
#3282
renovate[bot]
closed
1 week ago
2
linting fails to execute if "----" present in module patch diff file
#3281
znorgaard
opened
2 weeks ago
0
General: Run pre-commit when testing linting the template pipeline
#3280
mirpedrol
closed
2 weeks ago
0
General: Add hint to solve git errors with a synced repo
#3279
mirpedrol
closed
2 weeks ago
1
Allow skipping linting of specific subworkflows
#3278
mirpedrol
opened
2 weeks ago
0
Lint that module nf-tests use a single config with sourcing the args from params
#3277
mahesh-panchal
opened
2 weeks ago
0
handle new schema structure in `nf-core pipelines create-params-file`
#3276
mashehu
closed
2 weeks ago
1
Update pre-commit hook astral-sh/ruff-pre-commit to v0.7.3
#3275
renovate[bot]
closed
3 weeks ago
1
Gitpod miniforge
#3274
mahesh-panchal
closed
3 weeks ago
2
Single qutation mark ' in a comment makes AWS release full test break
#3273
jannikseidelQBiC
opened
3 weeks ago
2
Template: Add `gpu` profile
#3272
mashehu
opened
3 weeks ago
12
template: add `gpu` profile
#3271
mashehu
closed
3 weeks ago
3
Phase out the `when` directive
#3270
nictru
opened
3 weeks ago
0
Update base to use new previous task
#3269
edmundmiller
opened
1 month ago
0
Fix typo
#3268
SPPearce
closed
1 month ago
1
Fix logo typo in help message for create logos
#3267
jfy133
closed
1 month ago
2
Running prettier on new pipeline during `pipelines create` fails silently
#3266
awgymer
opened
1 month ago
0
3262 Fix pipeline lint bug for pipelines with minimal template features
#3265
awgymer
opened
1 month ago
0
CI Runs failing due to (potential) bug in utils method for fetching repo releases
#3264
awgymer
opened
1 month ago
0
Un-informative error message from strange linting runs
#3263
fasterius
closed
2 weeks ago
1
nf-core pipeline lint gives cryptic prettier error message
#3262
marrip
opened
1 month ago
7
create template GENERATE_DOWNSTREAM_SAMPLESHEETS for tools
#3261
Joon-Klaps
opened
1 month ago
1
3257 - Add linkify version to fix bioconda dependencies
#3260
pmoris
closed
1 month ago
3
create template GENERATE_DOWNSTREAM_SAMPLESHEETS for tools
#3259
Joon-Klaps
opened
1 month ago
0
Provide novel tooling for regulatory needs
#3258
apeltzer
opened
1 month ago
1
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